Your Negatives Decide Your Accuracy: 92% That Means Nothing
Random UniProt negatives quietly turn peptide prediction into short versus long. Here is what an honest benchmark costs, and why it is worth paying.
Machine Learning for Biology04
Subject · 3 posts
peptides
Turning a Peptide Into Numbers: A Tour of the Descriptor Zoo
AAC, DPC, DDE, CKSAAP, CTD, PAAC and QSO: every way I know to turn a peptide into a fixed-length vector, and what each one throws away.
Machine Learning for Biology02
Peptides 101: The Tiny Molecular Sentences Your Body Writes
What a peptide actually is, why order and side chains carry the information, and why 13 residues is a different modelling problem from 300.
Machine Learning for Biology01